Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1227423 to 1230111 13257 mRNA_4890: 13258 - HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322, at 1230459 to 1234781 13258 mRNA_4891: 13259 - KOG3140 Predicted membrane protein, at 1235999 to 1237638 13259 mRNA_4892: 13260 - K00915 IPMK, IPK2 inositol-polyphosphate multikinase, at 1237907 to 1239157 13260 mRNA_4893: 13261 - Hypothetical Protein, at 1239240 to 1240302 13261
Group Condition mRNA_4889 mRNA_4890 mRNA_4891 mRNA_4892 mRNA_4893
13257
13258
13259
13260
13261
facs on lipid accumulation Sorted No BODIPY Gate -0.7   -0.4    
ypd buoyancy 40 hrs High Buoyancy 0.1   -1.1    
facs on lipid accumulation Sorted Low BODIPY Gate -1.2   0.3    
facs on lipid accumulation Sorted High BODIPY Gate -0.6   -0.1    
growth on ricinoleic acid YNB Ricinoleic Acid -0.4   -0.2    
growth on ypd YPD -0.1   -0.5    
ypd buoyancy 40 hrs Low Buoyancy -0.0   -0.5    
ypd buoyancy 40 hrs No Buoyancy Separation 0.7   -1.1    
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4   0.1    
ypd buoyancy 40 hrs Median Buoyancy 0.2   -0.4    
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2   0.2    
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2   0.3    
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3   0.5    
growth on oleic acid YNB Oleic Acid -0.1   0.3    
growth on ricinoleic acid YNB Glucose 0.0   0.3    
auxotrophy Dropout Complete -0.5   0.9    
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3   0.7    
growth on oleic acid YNB Glucose 0.0   0.7    
auxotrophy YNB Glucose 75mM Arginine -0.3   1.2    
auxotrophy YNB Glucose 75mM Methionine -0.3   1.4    
auxotrophy YNB Glucose -0.0   1.3    
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