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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297
13120
mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061
13121
mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931606 to 933249
13122
mRNA_4755: 13123 - Hypothetical Protein, at 934483 to 935126
13123
mRNA_4756: 13124 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 935432 to 936982
13124
Group
Condition
mRNA_4752
mRNA_4753
mRNA_4754
mRNA_4755
mRNA_4756
13120
13121
13122
13123
13124
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.0
-0.3
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
0.0
0.2
0.8
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
0.1
0.1
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
0.1
-0.3
0.2
growth on ypd
YPD
0.4
-0.0
-0.1
-0.2
0.1
growth on oleic acid
YNB Oleic Acid
-0.2
0.1
0.3
-0.2
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
-0.1
0.2
-0.2
0.2
auxotrophy
YNB Glucose
0.1
0.1
-0.0
-0.1
0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
0.3
0.2
0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
0.0
0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
0.1
-0.0
0.2
0.1
0.0
ypd buoyancy
40 hrs Median Buoyancy
0.1
0.1
0.1
0.0
0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
0.1
0.1
0.7
-0.4
growth on oleic acid
YNB Glucose
0.1
-0.0
0.3
-0.0
0.3
auxotrophy
Dropout Complete
0.1
-0.0
-0.0
0.2
0.3
growth on ricinoleic acid
YNB Glucose
0.3
-0.0
0.1
0.1
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
0.2
-0.0
0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.2
0.0
0.2
0.3
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.2
0.2
0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.0
0.2
0.1
0.6
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
0.1
0.2
0.4
0.6
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