Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866956 to 867873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868153 to 868831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868902 to 870638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870839 to 873938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874263 to 876540 13098
Group Condition mRNA_4726 mRNA_4727 mRNA_4728 mRNA_4729 mRNA_4730
13094
13095
13096
13097
13098
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 0.1 -0.2 0.0 -0.8
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 0.2 0.3 0.0 -1.1
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.7 -0.3 0.4 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.9 -0.1 0.6 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.4 0.2 -0.2 0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate 0.1 -1.1 0.2 0.2 0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 0.0 0.4 0.2 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 -1.0 0.4 -0.2 1.1
growth on ypd YPD 0.4 -0.1 -0.1 0.2 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.2 0.0 0.4 0.3 -0.3
growth on oleic acid YNB Glucose 0.3 -0.2 -0.5 0.1 0.7
growth on ricinoleic acid YNB Glucose -0.0 -0.3 0.6 0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.5 -0.1 -0.3 -0.0 0.4
auxotrophy YNB Glucose -0.2 -0.2 0.2 0.3 0.6
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.2 0.2 0.4 0.4
growth on oleic acid YNB Oleic Acid 0.3 -0.3 -0.4 -0.0 1.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.2 0.2 -0.3 -0.3 1.0
auxotrophy Dropout Complete -0.1 -0.2 0.3 0.3 0.8
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1 -0.1 0.1 0.1 1.2
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.0 -0.1 0.6 1.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 -0.3 0.5 0.3 0.9
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