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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055
13080
mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234
13081
mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838359 to 840435
13082
mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840551 to 841550
13083
mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841773 to 842668
13084
Group
Condition
mRNA_4712
mRNA_4713
mRNA_4714
mRNA_4715
mRNA_4716
13080
13081
13082
13083
13084
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.5
-1.7
-0.5
-3.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
-0.0
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.2
0.0
0.3
ypd buoyancy
40 hrs Low Buoyancy
0.1
-0.4
-0.1
0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.6
0.4
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.1
0.1
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.0
-0.3
-0.7
-0.0
0.8
auxotrophy
YNB Glucose 75mM Methionine
0.7
0.1
-0.3
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.0
0.0
-0.4
0.2
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
0.1
0.1
0.1
-0.2
auxotrophy
Dropout Complete
0.5
0.1
0.2
-0.9
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
0.0
-0.0
0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
0.2
0.2
0.3
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.2
0.1
0.3
-0.0
growth on ypd
YPD
0.4
-0.2
0.3
0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.7
-0.0
0.2
0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
0.5
0.1
-0.1
-0.3
0.3
auxotrophy
YNB Glucose
0.7
0.0
-0.1
-0.4
0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
0.3
0.1
0.6
growth on oleic acid
YNB Glucose
0.4
-0.0
-0.2
0.6
0.4
growth on ricinoleic acid
YNB Glucose
0.7
-0.2
0.3
0.2
0.4
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