Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824184 to 826218 13078 mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080 mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234 13081 mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838359 to 840435 13082
Group Condition mRNA_4710 mRNA_4711 mRNA_4712 mRNA_4713 mRNA_4714
13078
13079
13080
13081
13082
ypd buoyancy 40 hrs No Buoyancy Separation 0.5 0.3 -0.5 -0.5 -1.7
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 0.0 -0.2 -0.6 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -0.0 0.0 -0.3 -0.7
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.1 -0.2 -0.1 -0.4 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid 0.3 0.3 -0.3 -0.1 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.1 0.3 0.1 -0.4 -0.1
growth on ypd YPD -0.6 -0.0 0.4 -0.2 0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.0 -0.1 -0.0 0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.7 -0.2 -0.2 -0.1 -0.1
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.0 -0.0 0.0 -0.0
growth on oleic acid YNB Oleic Acid 0.4 -0.1 -0.2 -0.1 0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.6 -0.1 0.0 0.0 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.4 -0.2 -0.1 0.1 0.1
growth on oleic acid YNB Glucose 0.3 -0.0 0.4 -0.0 -0.2
growth on ricinoleic acid YNB Glucose -0.2 0.1 0.7 -0.2 0.3
auxotrophy Dropout Complete -0.2 0.2 0.5 0.1 0.2
auxotrophy YNB Glucose 75mM Methionine 0.2 0.2 0.7 0.1 -0.3
auxotrophy YNB Glucose 75mM Arginine 0.2 0.1 0.5 0.1 -0.1
auxotrophy YNB Glucose 0.3 0.1 0.7 0.0 -0.1
ypd buoyancy 40 hrs High Buoyancy 0.6 0.4 0.2 -0.2 0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.2 0.3 0.7 -0.0 0.2
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