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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380
12976
mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281
12977
mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578505 to 580784
12978
mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581110 to 587880
12979
mRNA_4612: 12980 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 594081 to 594633
12980
Group
Condition
mRNA_4608
mRNA_4609
mRNA_4610
mRNA_4611
mRNA_4612
12976
12977
12978
12979
12980
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.2
-0.2
0.1
auxotrophy
Dropout Complete
0.1
-0.7
0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.0
-0.3
0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
-0.3
0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
-0.1
-0.3
-0.1
auxotrophy
YNB Glucose
0.1
-0.4
0.0
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.3
0.0
0.0
growth on ypd
YPD
-0.2
-0.2
0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.0
0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
0.1
0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.2
0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
0.0
0.4
-0.2
growth on oleic acid
YNB Oleic Acid
0.3
0.1
0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.3
-0.0
0.2
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.2
-0.0
0.4
-0.2
growth on ricinoleic acid
YNB Glucose
0.5
-0.2
0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
0.9
0.3
-0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.6
-0.3
0.3
-0.0
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