Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281 12977 mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578505 to 580784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581110 to 587880 12979 mRNA_4612: 12980 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 594081 to 594633 12980
Group Condition mRNA_4608 mRNA_4609 mRNA_4610 mRNA_4611 mRNA_4612
12976
12977
12978
12979
12980
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 -0.5 0.0 -0.2  
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.4 -0.3 -0.3  
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.2 -0.2 0.1  
auxotrophy Dropout Complete 0.1 -0.7 0.0 -0.1  
facs on lipid accumulation Sorted Low BODIPY Gate -0.6 -0.0 -0.3 0.4  
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.1 -0.3 0.0 -0.3  
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0 -0.1 -0.3 -0.1  
auxotrophy YNB Glucose 0.1 -0.4 0.0 -0.1  
growth on oleic acid YNB Glucose -0.0 -0.3 0.0 0.0  
growth on ypd YPD -0.2 -0.2 0.2 -0.1  
ypd buoyancy 40 hrs Low Buoyancy -0.1 0.0 0.2 -0.3  
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.2 -0.1 -0.1 -0.1  
auxotrophy YNB Glucose 75mM Methionine -0.2 0.1 0.1 -0.0  
ypd buoyancy 40 hrs Median Buoyancy 0.2 -0.2 0.0 -0.1  
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 0.0 0.4 -0.2  
growth on oleic acid YNB Oleic Acid 0.3 0.1 0.1 -0.1  
auxotrophy YNB Glucose 75mM Arginine 0.3 -0.0 0.2 0.0  
growth on ricinoleic acid YNB Methylricinoleic Acid 0.2 -0.0 0.4 -0.2  
growth on ricinoleic acid YNB Glucose 0.5 -0.2 0.3 -0.2  
ypd buoyancy 40 hrs No Buoyancy Separation 0.9 0.3 -0.7 -0.1  
ypd buoyancy 40 hrs High Buoyancy 0.6 -0.3 0.3 -0.0  
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