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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479407 to 483783
12934
mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484052 to 485585
12935
mRNA_4568: 12936 - Hypothetical Protein, at 485805 to 489325
12936
mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955
12937
mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372
12938
Group
Condition
mRNA_4566
mRNA_4567
mRNA_4568
mRNA_4569
mRNA_4570
12934
12935
12936
12937
12938
growth on oleic acid
YNB Glucose
-0.0
-0.1
-0.1
-1.2
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.7
0.1
-0.7
-0.4
auxotrophy
YNB Glucose 75mM Methionine
0.2
0.1
-0.2
-0.0
-1.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-0.3
0.5
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
0.1
0.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
0.1
-0.1
-0.7
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.0
0.1
-0.1
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
0.1
0.2
-0.1
-0.9
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.1
0.8
-0.7
ypd buoyancy
40 hrs Median Buoyancy
0.1
0.3
-0.2
-0.5
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
0.4
-0.0
0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
0.1
0.2
-0.2
0.0
0.0
growth on ypd
YPD
0.1
0.1
0.0
0.4
-0.3
auxotrophy
Dropout Complete
0.4
0.1
-0.3
0.9
-0.7
auxotrophy
YNB Glucose
0.3
0.4
-0.2
0.6
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
0.1
0.2
1.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
-0.1
1.7
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
-0.1
0.3
0.7
auxotrophy
YNB Glucose 75mM Arginine
0.2
0.4
-0.1
1.0
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
0.7
-0.3
0.4
0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
0.3
0.1
1.0
-0.2
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