Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190783 to 192210 12811 mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192808 to 197198 12812 mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197325 to 199939 12813 mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200196 to 203838 12814 mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204059 to 206130 12815
Group Condition mRNA_4443 mRNA_4444 mRNA_4445 mRNA_4446 mRNA_4447
12811
12812
12813
12814
12815
ypd buoyancy 40 hrs No Buoyancy Separation -1.1   -0.1 -0.4  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3   0.0 -0.1  
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3   0.0 -0.0  
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4   0.0 0.1  
ypd buoyancy 40 hrs High Buoyancy -0.1   0.1 -0.2  
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0   -0.1 -0.0  
ypd buoyancy 40 hrs Median Buoyancy 0.0   -0.0 -0.1  
growth on ypd YPD -0.3   0.2 0.2  
growth on ricinoleic acid YNB Glucose 0.1   0.1 -0.1  
growth on ricinoleic acid YNB Ricinoleic Acid 0.3   -0.1 -0.1  
ypd buoyancy 40 hrs Low Buoyancy 0.2   -0.2 0.1  
facs on lipid accumulation Sorted High BODIPY Gate 0.4   -0.0 -0.3  
facs on lipid accumulation Sorted No BODIPY Gate 0.2   -0.1 0.1  
growth on ricinoleic acid YNB Methylricinoleic Acid 0.0   0.2 0.1  
auxotrophy Dropout Complete 0.2   0.2 -0.0  
facs on lipid accumulation Sorted Low BODIPY Gate 0.2   -0.0 0.2  
auxotrophy YNB Glucose 75mM Arginine 0.0   0.2 0.2  
auxotrophy YNB Glucose 75mM Methionine 0.1   0.3 0.1  
auxotrophy YNB Glucose 0.1   0.4 0.1  
growth on oleic acid YNB Glucose 0.2   0.2 0.2  
growth on oleic acid YNB Oleic Acid 0.4   0.3 0.1  
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