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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188576 to 190157
12810
mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190783 to 192210
12811
mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192808 to 197198
12812
mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197325 to 199939
12813
mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200196 to 203838
12814
Group
Condition
mRNA_4442
mRNA_4443
mRNA_4444
mRNA_4445
mRNA_4446
12810
12811
12812
12813
12814
ypd buoyancy
40 hrs No Buoyancy Separation
0.1
-1.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.4
0.0
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
-0.1
-0.0
growth on ypd
YPD
-0.1
-0.3
0.2
0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
0.1
0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
0.1
0.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.3
-0.1
0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
0.0
0.2
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.2
-0.2
0.1
auxotrophy
Dropout Complete
0.2
0.2
0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
0.0
0.0
0.2
0.2
auxotrophy
YNB Glucose 75mM Methionine
0.0
0.1
0.3
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
0.2
-0.1
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.5
0.4
-0.0
-0.3
growth on oleic acid
YNB Glucose
0.1
0.2
0.2
0.2
auxotrophy
YNB Glucose
0.2
0.1
0.4
0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
0.3
0.2
-0.0
0.2
growth on oleic acid
YNB Oleic Acid
0.1
0.4
0.3
0.1
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