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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1142539 to 1145554
12378
mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1145939 to 1149704
12379
mRNA_4012: 12380 - KOG2370 Cactin, at 1149929 to 1152487
12380
mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1153401 to 1154671
12381
mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1154900 to 1159801
12382
Group
Condition
mRNA_4010
mRNA_4011
mRNA_4012
mRNA_4013
mRNA_4014
12378
12379
12380
12381
12382
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
-0.1
-1.8
0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
0.2
-0.5
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
0.2
-0.7
0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.2
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.5
-0.3
-0.7
0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
0.1
-0.2
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
0.3
auxotrophy
YNB Glucose
-0.3
0.1
-0.0
0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
0.5
0.1
-0.5
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
0.2
0.0
0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
0.1
-0.3
0.6
auxotrophy
Dropout Complete
-0.5
-0.0
0.6
0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
-0.1
-0.1
0.4
ypd buoyancy
40 hrs Median Buoyancy
0.2
0.4
-0.1
0.0
growth on oleic acid
YNB Glucose
0.1
0.1
0.4
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
1.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
0.8
0.3
-0.4
0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
0.2
-0.4
1.2
0.2
growth on ypd
YPD
0.0
0.4
1.8
0.2
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