Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1142539 to 1145554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1145939 to 1149704 12379 mRNA_4012: 12380 - KOG2370 Cactin, at 1149929 to 1152487 12380 mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1153401 to 1154671 12381 mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1154900 to 1159801 12382
Group Condition mRNA_4010 mRNA_4011 mRNA_4012 mRNA_4013 mRNA_4014
12378
12379
12380
12381
12382
facs on lipid accumulation Sorted No BODIPY Gate 0.1 -0.1   -1.8 0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 0.2   -0.5 0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 0.2   -0.7 0.3
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.1   -0.2 0.1
facs on lipid accumulation Sorted High BODIPY Gate 0.5 -0.3   -0.7 0.2
auxotrophy YNB Glucose 75mM Arginine -0.3 0.1   -0.2 0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.2   -0.1 0.3
auxotrophy YNB Glucose -0.3 0.1   -0.0 0.1
growth on oleic acid YNB Oleic Acid -0.1 -0.0   0.2 -0.2
ypd buoyancy 40 hrs Low Buoyancy 0.5 0.1   -0.5 0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 0.2   0.0 0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 0.1   -0.3 0.6
auxotrophy Dropout Complete -0.5 -0.0   0.6 0.2
growth on ricinoleic acid YNB Glucose -0.1 -0.2   0.7 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1 -0.1   -0.1 0.4
ypd buoyancy 40 hrs Median Buoyancy 0.2 0.4   -0.1 0.0
growth on oleic acid YNB Glucose 0.1 0.1   0.4 0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.5   1.4 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation 0.8 0.3   -0.4 0.0
growth on ricinoleic acid YNB Ricinoleic Acid 0.2 -0.4   1.2 0.2
growth on ypd YPD 0.0 0.4   1.8 0.2
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