Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1136733 to 1139810 12376 mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1140211 to 1141922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1142539 to 1145554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1145939 to 1149704 12379 mRNA_4012: 12380 - KOG2370 Cactin, at 1149929 to 1152487 12380
Group Condition mRNA_4008 mRNA_4009 mRNA_4010 mRNA_4011 mRNA_4012
12376
12377
12378
12379
12380
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.5 -0.1 -0.5  
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.7 0.2 -0.4  
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.9 -0.2 0.2  
facs on lipid accumulation Sorted Low BODIPY Gate 0.5 -0.9 -0.3 0.2  
ypd buoyancy 40 hrs Median Buoyancy -0.1 -1.1 0.2 0.4  
ypd buoyancy 40 hrs Low Buoyancy -0.1 -1.0 0.5 0.1  
facs on lipid accumulation Sorted High BODIPY Gate 0.1 -0.7 0.5 -0.3  
auxotrophy Dropout Complete -0.0 0.3 -0.5 -0.0  
growth on ricinoleic acid YNB Glucose -0.1 0.1 -0.1 -0.2  
growth on oleic acid YNB Oleic Acid -0.0 -0.0 -0.1 -0.0  
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 0.1 0.1 -0.1  
auxotrophy YNB Glucose 75mM Methionine 0.0 0.1 -0.2 -0.1  
growth on oleic acid YNB Glucose -0.1 0.0 0.1 0.1  
auxotrophy YNB Glucose -0.1 0.4 -0.3 0.1  
facs on lipid accumulation Sorted No BODIPY Gate 0.4 -0.3 0.1 -0.1  
auxotrophy YNB Glucose 75mM Arginine 0.2 0.5 -0.3 0.1  
ypd buoyancy 40 hrs No Buoyancy Separation 0.0 -0.5 0.8 0.3  
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 0.8 -0.1 0.2  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1 1.1 -0.2 -0.2  
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 1.1 -0.1 0.1  
growth on ypd YPD -0.1 1.0 0.0 0.4  
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