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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878883 to 880998
12279
mRNA_3912: 12280 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 881146 to 884820
12280
mRNA_3913: 12281 - SUPERFAMILY--SSF48452, at 885030 to 886525
12281
mRNA_3914: 12282 - HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350, at 886816 to 890417
12282
mRNA_3915: 12283 - K01062 PLA2G7, PAFAH platelet-activating factor acetylhydrolase, at 890640 to 892402
12283
Group
Condition
mRNA_3911
mRNA_3912
mRNA_3913
mRNA_3914
mRNA_3915
12279
12280
12281
12282
12283
auxotrophy
Dropout Complete
-0.6
-0.5
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
-0.2
-0.8
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.0
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-0.5
auxotrophy
YNB Glucose
-0.4
-0.3
0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
0.1
growth on oleic acid
YNB Glucose
0.2
0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
0.1
-0.0
growth on oleic acid
YNB Oleic Acid
0.4
0.0
-0.2
growth on ypd
YPD
-0.4
0.2
0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
0.2
0.7
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