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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723329 to 725612
12212
mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726085 to 727619
12213
mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728608 to 730842
12214
mRNA_3847: 12215 - Hypothetical Protein, at 732647 to 733359
12215
mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733873 to 734892
12216
Group
Condition
mRNA_3844
mRNA_3845
mRNA_3846
mRNA_3847
mRNA_3848
12212
12213
12214
12215
12216
growth on ypd
YPD
0.3
-0.3
-0.0
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
0.0
0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
0.7
-0.3
0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.0
-0.1
0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.2
-0.1
0.4
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.5
-0.1
0.1
0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.4
-0.2
-0.1
0.4
auxotrophy
YNB Glucose 75mM Methionine
0.2
0.1
0.1
0.3
auxotrophy
Dropout Complete
0.1
0.4
-0.1
0.3
growth on ricinoleic acid
YNB Glucose
0.1
0.0
0.1
0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
0.4
0.2
-0.0
0.3
growth on oleic acid
YNB Glucose
0.1
0.2
0.2
0.4
ypd buoyancy
40 hrs No Buoyancy Separation
0.6
0.3
0.0
0.0
auxotrophy
YNB Glucose
-0.1
0.6
0.1
0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.4
1.6
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.5
-0.1
0.6
growth on oleic acid
YNB Oleic Acid
0.4
0.3
0.0
0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.1
1.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
0.0
-0.1
1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
0.2
0.2
1.6
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