Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718852 to 719357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719514 to 723213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723329 to 725612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726085 to 727619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728608 to 730842 12214
Group Condition mRNA_3842 mRNA_3843 mRNA_3844 mRNA_3845 mRNA_3846
12210
12211
12212
12213
12214
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.2 -0.2 -0.1 -0.4
ypd buoyancy 40 hrs High Buoyancy -0.2 0.0 -0.3 -0.3 0.0
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.0 -0.1 0.0 -0.1
growth on ypd YPD -0.5 0.3 0.3 -0.3 -0.0
growth on ricinoleic acid YNB Glucose -0.4 0.0 0.1 0.0 0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 0.2 0.4 0.2 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.0 -0.2 -0.2 0.2 0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 0.1 0.5 -0.1 0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.3 -0.0 -0.1 0.0 -0.1
ypd buoyancy 40 hrs Median Buoyancy 0.1 -0.0 -0.1 0.2 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.4 -0.0 -0.0 -0.2 -0.1
growth on oleic acid YNB Oleic Acid -0.5 -0.0 0.4 0.3 0.0
auxotrophy Dropout Complete -0.1 -0.1 0.1 0.4 -0.1
facs on lipid accumulation Sorted High BODIPY Gate 0.0 0.2 0.4 -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.4 0.3 0.3 0.2 -0.0
growth on oleic acid YNB Glucose 0.1 -0.1 0.1 0.2 0.2
auxotrophy YNB Glucose 75mM Methionine 0.3 -0.2 0.2 0.1 0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 0.2 0.7 -0.3 0.0
auxotrophy YNB Glucose 0.1 -0.2 -0.1 0.6 0.1
auxotrophy YNB Glucose 75mM Arginine 0.3 -0.2 0.1 0.5 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation 0.1 -0.3 0.6 0.3 0.0
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