Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470340 to 473925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474492 to 476469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476780 to 478513 12111 mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479560 to 485967 12112 mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486209 to 486880 12113
Group Condition mRNA_3741 mRNA_3742 mRNA_3743 mRNA_3744 mRNA_3745
12109
12110
12111
12112
12113
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.9 0.1 -0.1 -1.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 -0.7 -0.5 0.2 -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.7 0.0 0.5 -1.1
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.4 -0.3 -1.1 0.8
auxotrophy Dropout Complete -0.9 0.4 0.1 0.6 -1.6
auxotrophy YNB Glucose -0.7 0.2 0.1 0.2 -1.3
auxotrophy YNB Glucose 75mM Arginine -0.7 0.1 0.1 0.4 -1.3
facs on lipid accumulation Sorted Low BODIPY Gate -1.6 -0.4 0.1 -0.3 0.8
facs on lipid accumulation Sorted No BODIPY Gate -1.1 -0.3 -0.0 -0.8 0.9
ypd buoyancy 40 hrs Low Buoyancy -0.3 0.2 0.0 -0.1 -0.6
growth on ricinoleic acid YNB Glucose -0.2 -0.1 0.1 0.1 -0.4
growth on oleic acid YNB Glucose -0.7 0.3 -0.2 0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.6 0.2 0.1 0.5 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.1 0.4 -0.0 -0.1 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.3 -0.1 0.1 0.3 -0.4
growth on oleic acid YNB Oleic Acid -0.3 0.4 0.0 0.8 -0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1 0.3 -0.0 0.5 -0.5
growth on ypd YPD 0.2 -0.1 0.1 -0.1 0.3
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.3 -0.0 -0.1 0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.4 -0.4 0.4 0.7 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 0.2 0.1 -0.0 0.7
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