Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464797 to 466425 12105 mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466684 to 467899 12106 mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468433 to 469585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469899 to 470347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470340 to 473925 12109
Group Condition mRNA_3737 mRNA_3738 mRNA_3739 mRNA_3740 mRNA_3741
12105
12106
12107
12108
12109
ypd buoyancy 40 hrs No Buoyancy Separation -1.4   -1.4 -0.1 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -0.9   -0.1 -0.3 -1.6
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8   -0.8 -0.2 0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.6   -0.1 -0.3 -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.4   0.1 0.0 -1.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6   -0.5 -0.2 0.1
auxotrophy YNB Glucose 75mM Methionine -0.5   -0.1 0.0 -0.6
auxotrophy Dropout Complete -0.5   0.0 0.3 -0.9
auxotrophy YNB Glucose 75mM Arginine -0.1   -0.3 0.1 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.1   -0.1 -0.1 0.4
growth on oleic acid YNB Glucose 0.1   -0.2 0.1 -0.7
ypd buoyancy 40 hrs High Buoyancy 0.1   -0.6 0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4   0.1 0.2 -0.4
auxotrophy YNB Glucose 0.2   -0.0 0.0 -0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1   -0.2 -0.3 0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.4   0.4 0.4 -0.6
ypd buoyancy 40 hrs Median Buoyancy 0.6   -0.4 0.0 0.1
ypd buoyancy 40 hrs Low Buoyancy 0.6   -0.0 0.1 -0.3
growth on oleic acid YNB Oleic Acid -0.0   0.4 0.4 -0.3
growth on ricinoleic acid YNB Glucose -0.4   1.0 0.2 -0.2
growth on ypd YPD 2.9   0.3 0.1 0.2
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