Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387944 to 388740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389089 to 390202 12069 mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390554 to 394764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394995 to 398800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072
Group Condition mRNA_3700 mRNA_3701 mRNA_3702 mRNA_3703 mRNA_3704
12068
12069
12070
12071
12072
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.2   -0.7  
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.1   -0.1  
ypd buoyancy 40 hrs No Buoyancy Separation -0.9 0.5   -0.1  
auxotrophy Dropout Complete -0.3 0.2   -0.2  
ypd buoyancy 40 hrs Low Buoyancy -0.2 0.0   -0.1  
growth on ricinoleic acid YNB Glucose -0.6 0.3   -0.0  
auxotrophy YNB Glucose -0.1 0.2   -0.2  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.1   -0.0  
facs on lipid accumulation Sorted No BODIPY Gate 0.1 -0.0   -0.1  
growth on oleic acid YNB Glucose -0.4 0.7   -0.2  
auxotrophy YNB Glucose 75mM Methionine -0.1 0.3   -0.2  
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 0.6   -0.1  
growth on ypd YPD -0.1 0.3   -0.0  
ypd buoyancy 40 hrs High Buoyancy 0.1 0.2   0.1  
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.2 0.2   0.1  
growth on oleic acid YNB Oleic Acid 0.1 0.5   -0.2  
facs on lipid accumulation Sorted High BODIPY Gate 0.5 0.0   0.0  
growth on ricinoleic acid YNB Ricinoleic Acid 0.2 0.5   -0.3  
auxotrophy YNB Glucose 75mM Arginine 0.3 0.4   -0.1  
facs on lipid accumulation Sorted Low BODIPY Gate 0.3 0.3   0.1  
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.2 0.3   0.3  
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