Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3699: 12067 - KOG0870 DNA polymerase epsilon, subunit D, at 386627 to 387665 12067 mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387944 to 388740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389089 to 390202 12069 mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390554 to 394764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394995 to 398800 12071
Group Condition mRNA_3699 mRNA_3700 mRNA_3701 mRNA_3702 mRNA_3703
12067
12068
12069
12070
12071
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 -0.1 -0.2   -0.7
auxotrophy Dropout Complete -0.7 -0.3 0.2   -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -1.6 0.3 0.3   0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.9 0.5   -0.1
growth on ricinoleic acid YNB Glucose -0.3 -0.6 0.3   -0.0
growth on oleic acid YNB Glucose -0.5 -0.4 0.7   -0.2
auxotrophy YNB Glucose 75mM Methionine -0.5 -0.1 0.3   -0.2
auxotrophy YNB Glucose -0.1 -0.1 0.2   -0.2
ypd buoyancy 40 hrs Median Buoyancy 0.5 -0.2 -0.1   -0.1
facs on lipid accumulation Sorted No BODIPY Gate 0.0 0.1 -0.0   -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.4 0.5 0.0   0.0
growth on ypd YPD -0.1 -0.1 0.3   -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.4 -0.1 -0.1   -0.0
ypd buoyancy 40 hrs Low Buoyancy 0.7 -0.2 0.0   -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.3 -0.3 0.6   -0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 0.3 0.4   -0.1
growth on oleic acid YNB Oleic Acid 0.1 0.1 0.5   -0.2
growth on ricinoleic acid YNB Ricinoleic Acid 0.3 0.2 0.5   -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.5 0.2 0.2   0.1
ypd buoyancy 40 hrs High Buoyancy 0.8 0.1 0.2   0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy 1.1 0.2 0.3   0.3
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