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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186018 to 188381
11990
mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190258 to 192689
11991
mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193379 to 194590
11992
mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194842 to 197624
11993
mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198016 to 198652
11994
Group
Condition
mRNA_3622
mRNA_3623
mRNA_3624
mRNA_3625
mRNA_3626
11990
11991
11992
11993
11994
growth on oleic acid
YNB Oleic Acid
-1.1
-0.5
-0.7
0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.1
-0.7
-0.0
0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
0.1
-1.4
-0.3
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
0.3
-1.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.1
0.4
0.1
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.4
-0.3
0.6
0.1
0.2
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.3
0.2
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
0.8
-0.6
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
0.1
-0.1
-0.5
0.1
0.3
auxotrophy
YNB Glucose
0.0
-0.3
0.0
-0.1
0.3
ypd buoyancy
40 hrs No Buoyancy Separation
0.3
1.0
-0.5
-0.7
0.6
ypd buoyancy
40 hrs Median Buoyancy
0.1
0.4
-0.4
0.3
0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.3
-0.1
0.6
0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
0.1
0.4
-0.7
0.6
0.5
growth on ypd
YPD
-0.1
0.2
-0.6
0.4
1.0
auxotrophy
YNB Glucose 75mM Methionine
0.0
-0.1
0.5
0.0
0.8
auxotrophy
Dropout Complete
0.0
-0.4
1.3
-0.4
0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
0.7
0.2
0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
0.5
0.0
0.6
0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
0.1
0.7
0.3
0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.2
0.5
1.0
0.5
0.2
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