Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179234 to 181455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181762 to 183020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183204 to 185483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186018 to 188381 11990
Group Condition mRNA_3618 mRNA_3619 mRNA_3620 mRNA_3621 mRNA_3622
11986
11987
11988
11989
11990
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.9 -0.3 0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.3 0.3 0.1 -0.5 -1.4
growth on oleic acid YNB Oleic Acid -0.3 0.2 0.2 -0.2 -1.1
growth on oleic acid YNB Glucose -0.1 -0.2 0.2 -0.4 -0.3
auxotrophy YNB Glucose 0.1 -0.5 -0.1 -0.3 0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -0.2 -0.3 -0.0 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.8 0.2 -0.1 0.0
auxotrophy Dropout Complete 0.1 -0.5 -0.0 -0.1 0.0
auxotrophy YNB Glucose 75mM Arginine 0.2 -0.4 0.1 -0.2 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid 0.4 0.4 0.2 -0.3 -0.9
ypd buoyancy 40 hrs High Buoyancy -0.2 0.3 -0.0 -0.2 0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.1 0.3 0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate 0.1 -0.0 -0.3 0.5 0.1
growth on ypd YPD 0.5 -0.0 -0.2 0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.5 -0.1 0.0 -0.1 0.2
ypd buoyancy 40 hrs Median Buoyancy 0.0 0.3 -0.0 0.2 0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.5 -0.4 0.3 0.0 0.2
growth on ricinoleic acid YNB Glucose 0.5 0.7 -0.1 -0.4 0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.6 -0.3 0.3 0.3 0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 1.1 0.3 -0.2 0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.5 0.1 0.1 0.5 0.3
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