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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111593 to 112967
11955
mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113212 to 115744
11956
mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116230 to 117801
11957
mRNA_3590: 11958 - K02136 ATPeF1G, ATP5C1, ATP3 F-type H+-transporting ATPase subunit gamma, at 118835 to 120315
11958
mRNA_3591: 11959 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 120588 to 122766
11959
Group
Condition
mRNA_3587
mRNA_3588
mRNA_3589
mRNA_3590
mRNA_3591
11955
11956
11957
11958
11959
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.9
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.6
0.0
growth on ricinoleic acid
YNB Glucose
0.3
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.3
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
0.1
-0.1
auxotrophy
YNB Glucose
0.1
0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
0.0
0.1
-0.2
growth on ypd
YPD
0.3
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.4
0.1
-0.4
growth on oleic acid
YNB Glucose
0.2
0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
0.1
0.6
-0.4
growth on oleic acid
YNB Oleic Acid
0.2
0.5
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
0.0
0.0
0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
0.6
-0.4
0.6
auxotrophy
Dropout Complete
0.2
0.9
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
0.3
0.4
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