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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75276 to 76903
11938
mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77591 to 78625
11939
mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79105 to 81061
11940
mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81058 to 83632
11941
mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84191 to 85564
11942
Group
Condition
mRNA_3570
mRNA_3571
mRNA_3572
mRNA_3573
mRNA_3574
11938
11939
11940
11941
11942
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
0.0
-0.1
growth on ricinoleic acid
YNB Glucose
0.1
-0.3
-0.4
growth on oleic acid
YNB Glucose
-0.5
-0.1
0.1
auxotrophy
Dropout Complete
-0.1
0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.2
0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
0.2
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
0.1
0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
0.2
-0.0
auxotrophy
YNB Glucose
0.0
-0.1
0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
0.2
0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
0.3
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
-0.2
0.3
ypd buoyancy
40 hrs Median Buoyancy
0.1
-0.1
0.4
ypd buoyancy
40 hrs High Buoyancy
0.1
0.2
0.2
growth on ypd
YPD
0.1
-0.0
0.5
ypd buoyancy
40 hrs No Buoyancy Separation
0.0
0.3
0.3
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