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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16929 to 18162
11913
mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18733 to 20553
11914
mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21031 to 22475
11915
mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22720 to 24408
11916
mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24932 to 26343
11917
Group
Condition
mRNA_3545
mRNA_3546
mRNA_3547
mRNA_3548
mRNA_3549
11913
11914
11915
11916
11917
growth on ypd
YPD
-0.6
-0.3
0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.1
-0.4
0.2
auxotrophy
YNB Glucose
-0.0
0.1
-0.3
0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.3
0.6
ypd buoyancy
40 hrs High Buoyancy
0.1
-0.4
0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
0.2
-0.2
0.3
auxotrophy
YNB Glucose 75mM Methionine
0.0
0.2
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.1
-0.0
0.0
0.1
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.1
0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
0.2
0.1
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
0.0
0.1
0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
0.2
0.0
0.6
auxotrophy
Dropout Complete
0.2
0.1
0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
0.1
0.1
0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
0.2
0.4
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
0.1
-0.3
0.6
0.4
facs on lipid accumulation
Sorted High BODIPY Gate
0.1
0.2
0.1
0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
0.2
0.2
0.4
growth on oleic acid
YNB Glucose
0.3
-0.3
0.5
0.6
growth on oleic acid
YNB Oleic Acid
0.4
0.1
0.3
0.4
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