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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255381 to 257476
11872
mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257806 to 259201
11873
mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259634 to 260419
11874
mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260634 to 261961
11875
mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262160 to 263731
11876
Group
Condition
mRNA_3504
mRNA_3505
mRNA_3506
mRNA_3507
mRNA_3508
11872
11873
11874
11875
11876
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
-3.5
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.1
-0.5
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
0.2
-0.2
-0.3
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
0.1
-0.5
0.1
0.1
growth on oleic acid
YNB Glucose
0.1
-0.0
-0.3
-0.1
-0.0
auxotrophy
Dropout Complete
0.2
0.1
-0.3
0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.4
-0.4
0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.3
0.4
-0.4
-0.1
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
0.2
-0.1
0.0
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
0.3
-0.1
-0.1
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.1
0.1
0.1
0.3
ypd buoyancy
40 hrs High Buoyancy
0.1
0.3
0.0
-0.1
0.1
growth on ricinoleic acid
YNB Glucose
0.0
0.5
-0.3
0.2
-0.0
auxotrophy
YNB Glucose
0.5
0.3
-0.1
0.0
-0.1
growth on ypd
YPD
0.1
-0.2
0.4
-0.1
0.4
auxotrophy
YNB Glucose 75mM Arginine
0.6
0.4
-0.1
0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.4
-0.3
0.5
0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.4
0.5
-0.0
0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.3
0.4
0.1
0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
0.5
0.6
0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.3
0.5
0.8
0.2
-0.1
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