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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129414 to 132360
11818
mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132983 to 136040
11819
mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136126 to 138036
11820
mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138350 to 139548
11821
mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139645 to 140934
11822
Group
Condition
mRNA_3450
mRNA_3451
mRNA_3452
mRNA_3453
mRNA_3454
11818
11819
11820
11821
11822
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
0.2
-0.9
-0.2
auxotrophy
YNB Glucose
-0.4
-0.4
-0.1
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
0.2
-0.7
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
0.4
-1.1
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
-1.0
0.5
auxotrophy
Dropout Complete
0.1
-0.5
-0.3
-0.2
growth on ypd
YPD
0.2
0.2
-1.4
0.2
growth on ricinoleic acid
YNB Glucose
0.1
-0.3
-0.5
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
0.3
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.1
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.2
-0.1
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.1
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.0
0.4
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
0.0
0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
0.1
0.0
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
0.1
-0.2
0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
0.1
0.2
0.2
growth on oleic acid
YNB Oleic Acid
0.2
0.1
0.1
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.0
-0.1
0.4
0.3
growth on oleic acid
YNB Glucose
0.2
-0.1
0.5
0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
0.4
-0.3
0.3
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