Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129414 to 132360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132983 to 136040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136126 to 138036 11820 mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138350 to 139548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139645 to 140934 11822
Group Condition mRNA_3450 mRNA_3451 mRNA_3452 mRNA_3453 mRNA_3454
11818
11819
11820
11821
11822
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 0.2   -0.9 -0.2
auxotrophy YNB Glucose -0.4 -0.4   -0.1 0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 0.2   -0.7 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 0.4   -1.1 0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.0   -1.0 0.5
auxotrophy Dropout Complete 0.1 -0.5   -0.3 -0.2
growth on ypd YPD 0.2 0.2   -1.4 0.2
growth on ricinoleic acid YNB Glucose 0.1 -0.3   -0.5 0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 0.3   -0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.0   -0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 -0.2   -0.1 0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.1   -0.1 0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.0 0.4   -0.4 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.1   0.0 0.1
ypd buoyancy 40 hrs High Buoyancy -0.2 0.1   0.0 0.1
growth on ricinoleic acid YNB Ricinoleic Acid 0.1 0.1   -0.2 0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 0.1   0.2 0.2
growth on oleic acid YNB Oleic Acid 0.2 0.1   0.1 0.1
ypd buoyancy 40 hrs Low Buoyancy 0.0 -0.1   0.4 0.3
growth on oleic acid YNB Glucose 0.2 -0.1   0.5 0.0
facs on lipid accumulation Sorted High BODIPY Gate 0.3 0.4   -0.3 0.3
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