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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574156 to 575292
11762
mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575450 to 577006
11763
mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577569 to 578953
11764
mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579279 to 580457
11765
mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831
11766
Group
Condition
mRNA_3394
mRNA_3395
mRNA_3396
mRNA_3397
mRNA_3398
11762
11763
11764
11765
11766
growth on ricinoleic acid
YNB Glucose
-0.2
0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.2
-0.2
0.4
-0.8
auxotrophy
YNB Glucose
0.0
-0.0
-0.1
0.1
ypd buoyancy
40 hrs Median Buoyancy
0.2
0.1
-0.2
-0.1
auxotrophy
Dropout Complete
-0.2
0.1
-0.0
0.3
ypd buoyancy
40 hrs Low Buoyancy
0.1
0.0
-0.2
0.2
ypd buoyancy
40 hrs High Buoyancy
0.2
0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
0.2
-0.0
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
0.2
0.1
0.3
ypd buoyancy
40 hrs No Buoyancy Separation
0.5
0.3
-0.4
0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
0.2
0.0
0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
0.5
0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.5
0.1
-0.0
-0.0
growth on oleic acid
YNB Glucose
0.1
0.3
0.0
0.1
growth on oleic acid
YNB Oleic Acid
0.1
0.1
0.0
0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.3
0.3
0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
0.4
0.1
0.7
growth on ypd
YPD
0.1
0.2
0.4
0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.0
0.5
-0.1
1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.7
-0.0
0.3
0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.5
0.1
0.3
0.8
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