Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360539 to 362421 11677 mRNA_3310: 11678 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 363759 to 365853 11678 mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365993 to 367448 11679 mRNA_3312: 11680 - Hypothetical Protein, at 367824 to 368675 11680 mRNA_3313: 11681 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 369892 to 372180 11681
Group Condition mRNA_3309 mRNA_3310 mRNA_3311 mRNA_3312 mRNA_3313
11677
11678
11679
11680
11681
ypd buoyancy 40 hrs No Buoyancy Separation -0.9 -0.2 -0.8 -3.3 -2.2
growth on ypd YPD -0.1 -0.1 -0.4 -0.6 -1.7
auxotrophy Dropout Complete -0.0 0.0 -0.1 -0.5 -1.6
growth on ricinoleic acid YNB Glucose 0.1 0.2 0.1 0.5 -2.8
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.2 -0.2 -0.1 -1.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 0.0 0.2 0.9 -2.7
ypd buoyancy 40 hrs High Buoyancy 0.0 -0.7 0.1 -0.3 -0.8
auxotrophy YNB Glucose 75mM Methionine 0.1 0.0 0.0 -0.5 -1.1
auxotrophy YNB Glucose 0.1 -0.1 0.2 -0.8 -0.7
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 0.6 -0.5 0.8 -1.5
growth on oleic acid YNB Oleic Acid -0.2 -0.0 -0.3 -0.3 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.2 -0.5 0.1 1.2 -1.5
growth on oleic acid YNB Glucose 0.1 -0.3 -0.1 0.2 -0.5
growth on ricinoleic acid YNB Methylricinoleic Acid 0.0 0.4 -0.2 0.3 -1.0
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.2 -0.0 0.1 -0.3
ypd buoyancy 40 hrs Median Buoyancy 0.0 -0.0 -0.4 0.2 -0.3
facs on lipid accumulation Sorted High BODIPY Gate 0.3 0.1 0.1 0.1 -1.1
facs on lipid accumulation Sorted No BODIPY Gate -0.2 0.3 0.1 0.5 -1.0
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1 -0.0 0.2 0.7 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 0.2 -0.2 0.3 0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.2 0.3 1.0 -0.0
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