Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290812 to 293862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457 mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296743 to 299433 11459 mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300048 to 303992 11460
Group Condition mRNA_3088 mRNA_3089 mRNA_3090 mRNA_3091 mRNA_3092
11456
11457
11458
11459
11460
growth on ricinoleic acid YNB Ricinoleic Acid -0.8 -1.7 0.1 0.1 0.3
growth on ypd YPD -0.3 -0.3 -0.4 -0.1 0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.4 -0.1 0.3 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.6 0.1 0.1 0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.1 -0.1 0.2 0.1
growth on oleic acid YNB Glucose -0.1 0.2 -0.1 -0.0 -0.1
facs on lipid accumulation Sorted No BODIPY Gate 0.0 -0.0 0.1 -0.3 0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.1 0.2 -0.0 0.2
ypd buoyancy 40 hrs Low Buoyancy -0.1 0.3 0.2 0.1 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation 0.1 0.5 -0.0 -0.1 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.1 0.2 -0.3 0.4 0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 0.5 0.3 -0.2 -0.0
growth on ricinoleic acid YNB Glucose 0.1 0.0 0.1 0.2 0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 0.3 0.0 0.5 0.1
ypd buoyancy 40 hrs High Buoyancy 0.2 0.5 -0.0 -0.0 0.0
facs on lipid accumulation Sorted Low BODIPY Gate 0.2 0.1 0.1 -0.1 0.4
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.0 0.1 0.4 0.0
auxotrophy YNB Glucose 75mM Arginine -0.0 0.0 0.3 0.3 0.1
growth on oleic acid YNB Oleic Acid 0.0 0.1 0.4 0.1 0.1
auxotrophy YNB Glucose 0.1 0.0 0.5 0.3 0.1
auxotrophy Dropout Complete 0.2 0.4 0.4 0.3 -0.1
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