Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281026 to 282865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282989 to 283312 11452 mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284368 to 286217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286949 to 288955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289552 to 290619 11455
Group Condition mRNA_3083 mRNA_3084 mRNA_3085 mRNA_3086 mRNA_3087
11451
11452
11453
11454
11455
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.4 -0.8 -0.2 -0.4
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.1 -0.3 -0.3 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -0.3 0.4 -0.3 -0.6
facs on lipid accumulation Sorted High BODIPY Gate 0.0 0.3 -0.2 -0.5 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.3 -0.2 0.4 -0.3
auxotrophy YNB Glucose -0.0 -0.4 -0.0 -0.3 0.2
auxotrophy YNB Glucose 75mM Methionine 0.0 -0.1 -0.0 -0.4 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 0.2 -0.3 -0.3 0.0
auxotrophy YNB Glucose 75mM Arginine 0.1 -0.1 -0.2 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.0 -0.3 0.1 -0.0 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.1 0.1 -0.4 0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.2 0.8 -0.1 -0.6
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.1 0.1 -0.1 -0.0
auxotrophy Dropout Complete -0.0 -0.2 0.2 -0.4 0.2
growth on ypd YPD 0.1 -0.5 0.5 0.1 -0.2
growth on ricinoleic acid YNB Glucose -0.0 0.0 0.1 -0.2 0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 0.1 -0.0 -0.1 0.1
growth on oleic acid YNB Glucose -0.0 -0.1 0.2 0.1 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 -0.2 0.2 -0.0 0.3
growth on oleic acid YNB Oleic Acid -0.0 -0.2 0.5 -0.0 0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -0.2 1.0 0.0 -0.2
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