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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48202 to 49332
11369
mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49376 to 50038
11370
mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50625 to 53414
11371
mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53581 to 54123
11372
mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54754 to 56074
11373
Group
Condition
mRNA_3001
mRNA_3002
mRNA_3003
mRNA_3004
mRNA_3005
11369
11370
11371
11372
11373
ypd buoyancy
40 hrs No Buoyancy Separation
0.1
-0.7
-0.7
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
0.2
0.5
-0.1
-2.2
growth on ypd
YPD
-0.4
-0.6
-0.1
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
0.1
-0.5
growth on oleic acid
YNB Oleic Acid
0.2
-0.3
0.1
-0.8
growth on oleic acid
YNB Glucose
0.1
0.1
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
0.0
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
0.1
-0.2
-0.2
0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
0.1
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
0.2
0.1
-0.3
auxotrophy
Dropout Complete
0.2
-0.3
-0.2
0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
0.2
0.3
-0.2
growth on ricinoleic acid
YNB Glucose
0.0
-0.1
0.1
-0.1
auxotrophy
YNB Glucose
0.2
-0.2
-0.1
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.1
0.1
0.1
auxotrophy
YNB Glucose 75mM Methionine
0.3
-0.1
-0.1
0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.2
0.4
0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
0.1
0.0
0.0
0.3
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
0.5
0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.1
0.2
0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.2
0.3
0.1
0.1
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