Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407863 to 408924 11237 mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409148 to 410896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411310 to 412108 11239 mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240 mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414211 to 417159 11241
Group Condition mRNA_2869 mRNA_2870 mRNA_2871 mRNA_2872 mRNA_2873
11237
11238
11239
11240
11241
facs on lipid accumulation Sorted Low BODIPY Gate 0.1 -0.6 -0.1 -0.5 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.3 -0.3 -0.4 0.3
auxotrophy Dropout Complete 0.2 -0.5 -0.2 -0.2 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.2 -0.4 0.1 -0.0
auxotrophy YNB Glucose 0.1 -0.4 -0.2 0.0 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.0 -0.2 -0.3 -0.1 0.1
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.0 -0.2 -0.1 0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.2 0.2 0.1 -0.1
growth on ricinoleic acid YNB Glucose -0.3 0.5 -0.2 -0.1 -0.0
growth on ypd YPD -0.3 -0.0 0.1 0.2 0.1
auxotrophy YNB Glucose 75mM Arginine 0.4 -0.4 -0.1 0.0 0.2
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.2 -0.1 0.1 -0.2
growth on oleic acid YNB Glucose -0.1 -0.1 0.1 -0.0 0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 0.0 -0.0 0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.0 -0.1 -0.0 0.1 0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.1 0.2 0.1 0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 0.6 -0.3 -0.0 0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.2 -0.0 0.3 0.3
growth on oleic acid YNB Oleic Acid -0.1 0.1 0.5 -0.2 0.2
ypd buoyancy 40 hrs High Buoyancy 0.1 0.2 -0.0 0.1 0.1
ypd buoyancy 40 hrs No Buoyancy Separation 0.1 -0.2 0.3 0.4 0.3
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