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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714836 to 719439
10733
mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719929 to 722612
10734
mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723290 to 728071
10735
mRNA_2368: 10736 - Hypothetical Protein, at 728706 to 728915
10736
mRNA_2369: 10737 - K02997 RP-S9e, RPS9 small subunit ribosomal protein S9e, at 730556 to 731871
10737
Group
Condition
mRNA_2365
mRNA_2366
mRNA_2367
mRNA_2368
mRNA_2369
10733
10734
10735
10736
10737
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.6
0.4
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.5
0.2
0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-1.0
-0.0
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-1.1
0.1
0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.5
0.0
0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
0.5
0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.6
0.0
0.8
auxotrophy
YNB Glucose
-0.7
0.0
1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
0.4
0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
0.0
0.8
growth on oleic acid
YNB Oleic Acid
-0.2
0.2
0.5
growth on oleic acid
YNB Glucose
-0.3
0.3
0.6
growth on ypd
YPD
0.5
-0.0
0.2
auxotrophy
Dropout Complete
0.0
-0.1
0.8
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