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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573284 to 575347
10676
mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575716 to 577026
10677
mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577390 to 579273
10678
mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580011 to 582871
10679
mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583261 to 584055
10680
Group
Condition
mRNA_2308
mRNA_2309
mRNA_2310
mRNA_2311
mRNA_2312
10676
10677
10678
10679
10680
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
-0.5
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.9
auxotrophy
YNB Glucose
-0.4
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
0.4
-0.7
growth on ricinoleic acid
YNB Glucose
-0.3
0.3
-0.6
auxotrophy
Dropout Complete
-0.3
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
0.3
-0.3
-0.6
growth on oleic acid
YNB Glucose
0.3
0.0
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.2
0.2
growth on ypd
YPD
0.1
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.3
0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
0.1
0.0
ypd buoyancy
40 hrs Median Buoyancy
0.1
0.2
0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.4
0.1
0.0
ypd buoyancy
40 hrs Low Buoyancy
0.1
-0.1
0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.4
0.5
ypd buoyancy
40 hrs High Buoyancy
0.2
0.0
1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
0.1
1.3
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