Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405486 to 409218 10594 mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409342 to 412255 10595 mRNA_2228: 10596 - K14191 DIM1 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase, at 412387 to 413949 10596 mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416574 to 419223 10597 mRNA_2230: 10598 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 419903 to 421996 10598
Group Condition mRNA_2226 mRNA_2227 mRNA_2228 mRNA_2229 mRNA_2230
10594
10595
10596
10597
10598
ypd buoyancy 40 hrs No Buoyancy Separation -0.8 -1.5   -0.6 0.4
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -2.2   0.0 0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -1.2   0.1 -0.8
auxotrophy YNB Glucose 0.2 -0.6   -0.4 -1.1
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.5   -0.7 -0.3
growth on oleic acid YNB Glucose -0.1 -0.7   -0.2 -0.4
growth on oleic acid YNB Oleic Acid 0.2 -0.9   -0.1 -0.5
auxotrophy Dropout Complete 0.0 -0.7   -0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.3 0.1   -0.4 -1.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.9   0.1 0.8
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.3 -0.2   -0.3 0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 0.0   -0.1 0.6
ypd buoyancy 40 hrs High Buoyancy 0.1 0.5   -0.4 0.5
growth on ricinoleic acid YNB Glucose -0.4 1.1   0.6 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.2 0.1   -0.3 1.0
growth on ricinoleic acid YNB Ricinoleic Acid -1.2 1.7   0.3 0.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 1.7   0.4 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.5 0.4   -0.4 1.0
growth on ypd YPD -0.2 1.2   -0.1 0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.4 0.2   0.1 1.1
ypd buoyancy 40 hrs Low Buoyancy 0.3 0.4   -0.1 1.3
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