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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304016 to 306697
10559
mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306918 to 310071
10560
mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310220 to 312834
10561
mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313322 to 318107
10562
mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319466 to 323008
10563
Group
Condition
mRNA_2191
mRNA_2192
mRNA_2193
mRNA_2194
mRNA_2195
10559
10560
10561
10562
10563
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
-0.2
-0.3
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
0.0
-0.2
-0.2
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
0.3
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
0.2
-0.1
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
0.1
0.4
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
0.2
-0.0
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
0.5
-0.4
0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
0.1
0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
0.1
-0.1
0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
0.3
0.0
0.0
ypd buoyancy
40 hrs High Buoyancy
0.1
0.1
0.0
0.0
0.0
growth on oleic acid
YNB Glucose
-0.0
-0.2
0.2
0.1
0.2
growth on ricinoleic acid
YNB Glucose
-0.2
0.2
0.2
0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
-0.1
-0.1
0.0
0.1
auxotrophy
Dropout Complete
0.1
-0.2
0.5
-0.1
0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.4
-0.2
0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
0.3
0.1
0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
0.6
-0.1
0.1
auxotrophy
YNB Glucose
0.1
-0.2
0.7
-0.1
0.1
growth on ypd
YPD
0.1
-0.1
0.6
0.0
0.0
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