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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308
10547
mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215
10548
mRNA_2181: 10549 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 278274 to 281386
10549
mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282735 to 284065
10550
mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284423 to 286019
10551
Group
Condition
mRNA_2179
mRNA_2180
mRNA_2181
mRNA_2182
mRNA_2183
10547
10548
10549
10550
10551
growth on ricinoleic acid
YNB Ricinoleic Acid
0.4
-0.1
-0.3
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.2
0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
0.2
-0.3
-0.8
0.2
growth on ricinoleic acid
YNB Glucose
0.3
-0.2
-0.4
-0.5
0.2
auxotrophy
Dropout Complete
-0.1
0.1
-0.1
-0.6
0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.2
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.2
-0.4
0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
0.0
-0.1
-0.6
0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.4
-0.1
-0.3
-0.5
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.1
-0.3
-0.4
0.2
auxotrophy
YNB Glucose
-0.2
0.2
-0.1
-0.5
0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
0.0
0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.4
-0.1
-0.1
0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
0.3
-0.1
0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.0
-0.1
-0.3
0.6
0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.0
-0.1
0.2
0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
0.0
0.1
0.5
0.3
ypd buoyancy
40 hrs Median Buoyancy
0.0
0.0
0.5
0.1
0.0
growth on ypd
YPD
0.1
0.5
-0.2
0.6
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
0.4
0.2
0.2
0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
0.5
0.0
0.1
0.5
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