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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146345 to 148532
10501
mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148859 to 150709
10502
mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150841 to 152742
10503
mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153030 to 154707
10504
mRNA_2137: 10505 - Hypothetical Protein, at 155364 to 157707
10505
Group
Condition
mRNA_2133
mRNA_2134
mRNA_2135
mRNA_2136
mRNA_2137
10501
10502
10503
10504
10505
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.6
0.0
0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
0.3
0.2
0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
0.1
0.3
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.2
0.1
0.0
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.4
-0.1
0.5
growth on ypd
YPD
0.2
0.0
0.3
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.4
0.1
-0.0
0.2
auxotrophy
Dropout Complete
-0.1
0.2
0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
0.4
-0.3
0.1
-0.5
0.3
growth on oleic acid
YNB Glucose
0.7
-0.7
0.2
-0.0
-0.1
auxotrophy
YNB Glucose
-0.3
0.5
0.4
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.5
-0.4
0.1
-0.1
0.3
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
0.2
0.1
-0.2
0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.2
-0.0
0.1
0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
0.3
0.4
0.0
-0.5
growth on oleic acid
YNB Oleic Acid
0.5
-0.4
0.2
0.2
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.6
0.1
0.1
0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.6
-0.4
0.2
-0.0
0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
0.4
0.4
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.4
0.6
0.3
-0.1
0.7
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