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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714669 to 717655
10371
mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987
10372
mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720750 to 723688
10373
mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973
10374
mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729212 to 731398
10375
Group
Condition
mRNA_2003
mRNA_2004
mRNA_2005
mRNA_2006
mRNA_2007
10371
10372
10373
10374
10375
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.8
-0.1
0.8
-1.6
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.0
-1.0
0.2
-1.6
0.2
auxotrophy
YNB Glucose 75mM Arginine
0.4
0.5
-1.0
-2.2
-0.3
growth on ricinoleic acid
YNB Glucose
1.0
-0.2
-0.8
-2.0
-0.5
auxotrophy
YNB Glucose
0.7
0.3
-1.1
-2.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.2
0.6
-1.0
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
-0.3
-0.6
0.2
growth on oleic acid
YNB Glucose
0.5
0.3
-0.2
-1.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
0.3
-1.1
0.2
auxotrophy
Dropout Complete
0.3
0.2
-0.6
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.8
0.1
0.6
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
1.5
-0.3
-0.6
-0.8
-0.1
growth on ypd
YPD
-0.2
-0.0
0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
0.4
0.2
0.2
-0.9
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
1.6
-0.0
-0.9
-1.0
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
0.2
0.3
0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
0.1
0.6
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.7
0.4
-0.6
-0.2
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
1.0
-0.7
-1.0
0.9
0.2
facs on lipid accumulation
Sorted High BODIPY Gate
2.2
0.3
-0.2
-0.4
-0.8
ypd buoyancy
40 hrs Low Buoyancy
0.6
0.3
1.0
0.5
-0.0
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