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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1959: 10327 - Hypothetical Protein, at 613200 to 613373
10327
mRNA_1960: 10328 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 613593 to 615935
10328
mRNA_1961: 10329 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140, at 616368 to 617254
10329
mRNA_1962: 10330 - K00133 asd aspartate-semialdehyde dehydrogenase, at 617594 to 618818
10330
mRNA_1963: 10331 - K00767 nadC, QPRT nicotinate-nucleotide pyrophosphorylase (carboxylating), at 619421 to 620670
10331
Group
Condition
mRNA_1959
mRNA_1960
mRNA_1961
mRNA_1962
mRNA_1963
10327
10328
10329
10330
10331
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-2.2
-1.4
growth on oleic acid
YNB Oleic Acid
-0.4
-2.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.2
-2.7
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-2.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
0.0
-1.9
growth on oleic acid
YNB Glucose
-0.3
-0.7
-0.3
growth on ypd
YPD
-0.4
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
0.2
-0.9
-0.2
auxotrophy
Dropout Complete
-0.1
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
0.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
0.3
-0.6
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
0.3
0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.1
0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.3
0.1
auxotrophy
YNB Glucose
-0.0
0.3
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.2
0.7
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
0.6
0.5
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