Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262 10306 mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308 mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309 mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310
Group Condition mRNA_1938 mRNA_1939 mRNA_1940 mRNA_1941 mRNA_1942
10306
10307
10308
10309
10310
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.2 0.5 -0.2 -1.0
growth on ypd YPD -0.1 -0.3 -0.2 -0.1 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.3 -0.5 0.5 -0.6
growth on oleic acid YNB Oleic Acid -0.2 -0.0 -0.0 -0.2 -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.4 0.4 -0.1 -0.3 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 0.4 0.0 -0.1 -0.8
auxotrophy YNB Glucose 75mM Methionine 0.3 -0.2 0.1 -0.5 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -0.2 -0.1 -0.7 0.7
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.4 0.1 0.3 -0.2
growth on oleic acid YNB Glucose 0.2 -0.1 -0.0 -0.3 0.1
auxotrophy Dropout Complete -0.2 0.0 0.1 -0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 -0.1 0.1 -0.2 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 -0.2 -0.1 0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy 0.2 -0.1 -0.2 0.0 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.6 -0.1 0.3 -0.3 -0.6
growth on ricinoleic acid YNB Ricinoleic Acid 0.6 0.1 0.3 -0.4 -0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.3 0.3 -0.1 0.5 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1 -0.1 -0.1 0.4 -0.0
ypd buoyancy 40 hrs Low Buoyancy 0.1 0.1 -0.2 0.4 -0.0
auxotrophy YNB Glucose 0.2 0.1 0.0 0.1 0.1
growth on ricinoleic acid YNB Glucose 0.7 -0.1 0.3 0.4 -0.3
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