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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262
10306
mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603
10307
mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777
10308
mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007
10309
mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897
10310
Group
Condition
mRNA_1938
mRNA_1939
mRNA_1940
mRNA_1941
mRNA_1942
10306
10307
10308
10309
10310
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
0.5
-0.2
-1.0
growth on ypd
YPD
-0.1
-0.3
-0.2
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.5
0.5
-0.6
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
-0.0
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
0.4
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
0.4
0.0
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
0.3
-0.2
0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
-0.7
0.7
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
0.1
0.3
-0.2
growth on oleic acid
YNB Glucose
0.2
-0.1
-0.0
-0.3
0.1
auxotrophy
Dropout Complete
-0.2
0.0
0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.1
0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
-0.1
0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.1
-0.2
0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.6
-0.1
0.3
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
0.6
0.1
0.3
-0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
0.3
-0.1
0.5
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.1
-0.1
0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
0.1
0.1
-0.2
0.4
-0.0
auxotrophy
YNB Glucose
0.2
0.1
0.0
0.1
0.1
growth on ricinoleic acid
YNB Glucose
0.7
-0.1
0.3
0.4
-0.3
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