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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329163 to 331495
10204
mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331991 to 335971
10205
mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336405 to 337627
10206
mRNA_1839: 10207 - Hypothetical Protein, at 337728 to 339625
10207
mRNA_1840: 10208 - Hypothetical Protein, at 340011 to 340722
10208
Group
Condition
mRNA_1836
mRNA_1837
mRNA_1838
mRNA_1839
mRNA_1840
10204
10205
10206
10207
10208
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.1
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.3
-0.8
-0.2
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
0.0
-1.1
growth on ypd
YPD
0.2
0.1
-0.3
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.9
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.9
0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-1.1
0.1
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.7
0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
0.1
0.0
auxotrophy
YNB Glucose
-0.4
-0.1
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.8
0.1
0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
0.2
-0.2
-0.5
auxotrophy
Dropout Complete
-0.0
0.2
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
0.3
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
0.1
0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
0.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
0.2
0.1
0.1
growth on oleic acid
YNB Glucose
-0.1
0.1
-0.1
0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
0.3
0.8
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