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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047
10168
mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231185 to 232547
10169
mRNA_1802: 10170 - K05546 GANAB alpha 1,3-glucosidase, at 232622 to 238014
10170
mRNA_1803: 10171 - K15205 TFC6 transcription factor C subunit 6, at 238307 to 241610
10171
mRNA_1804: 10172 - Hypothetical Protein, at 241788 to 243277
10172
Group
Condition
mRNA_1800
mRNA_1801
mRNA_1802
mRNA_1803
mRNA_1804
10168
10169
10170
10171
10172
auxotrophy
Dropout Complete
0.0
-0.7
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
0.3
-1.1
-0.7
auxotrophy
YNB Glucose
0.1
-0.8
-0.7
auxotrophy
YNB Glucose 75mM Methionine
0.3
-0.6
-1.1
auxotrophy
YNB Glucose 75mM Arginine
0.1
-0.6
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.4
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
0.1
0.8
-1.4
growth on ricinoleic acid
YNB Glucose
0.0
-0.9
0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.2
-0.8
0.4
ypd buoyancy
40 hrs High Buoyancy
0.0
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.5
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.6
0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.3
-0.1
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
0.1
-0.0
0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
0.7
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
0.2
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
0.2
0.4
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.7
-0.1
growth on ypd
YPD
-0.2
0.1
1.6
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