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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225398 to 226777
10166
mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515
10167
mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047
10168
mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231185 to 232547
10169
mRNA_1802: 10170 - K05546 GANAB alpha 1,3-glucosidase, at 232622 to 238014
10170
Group
Condition
mRNA_1798
mRNA_1799
mRNA_1800
mRNA_1801
mRNA_1802
10166
10167
10168
10169
10170
auxotrophy
Dropout Complete
-0.6
-0.2
0.0
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
0.2
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.4
0.3
-1.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
0.0
-0.9
auxotrophy
YNB Glucose
-0.2
-0.2
0.1
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.0
-0.5
growth on oleic acid
YNB Glucose
0.0
-0.4
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
0.1
-0.6
growth on oleic acid
YNB Oleic Acid
0.0
-0.3
-0.2
-0.3
growth on ypd
YPD
-0.4
0.1
-0.2
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.1
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
0.0
0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
0.0
0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
0.1
0.5
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.1
0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.4
-0.2
0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
0.1
0.1
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
0.3
0.1
0.8
ypd buoyancy
40 hrs Low Buoyancy
0.3
-0.1
0.2
0.7
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