Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836200 to 837347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838138 to 838939 10031 mRNA_1664: 10032 - Hypothetical Protein, at 839367 to 840051 10032 mRNA_1665: 10033 - K03358 APC11 anaphase-promoting complex subunit 11, at 840073 to 840626 10033 mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840920 to 841915 10034
Group Condition mRNA_1662 mRNA_1663 mRNA_1664 mRNA_1665 mRNA_1666
10030
10031
10032
10033
10034
ypd buoyancy 40 hrs Low Buoyancy -0.3   -0.4 -0.6  
facs on lipid accumulation Sorted Low BODIPY Gate -0.1   -0.3 -0.8  
growth on ricinoleic acid YNB Ricinoleic Acid 0.3   -0.3 -0.6  
auxotrophy Dropout Complete -0.3   -0.0 -0.1  
growth on ricinoleic acid YNB Glucose -0.0   -0.1 -0.3  
ypd buoyancy 40 hrs High Buoyancy -0.3   -0.5 0.5  
ypd buoyancy 40 hrs Median Buoyancy -0.1   -0.3 0.2  
growth on oleic acid YNB Glucose -0.0   -0.1 -0.1  
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4   -0.1 0.5  
auxotrophy YNB Glucose 75mM Methionine -0.0   -0.2 0.3  
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3   0.0 0.4  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2   -0.3 0.6  
ypd buoyancy 40 hrs No Buoyancy Separation -0.2   -0.4 0.7  
growth on ricinoleic acid YNB Methylricinoleic Acid 0.3   -0.1 0.1  
growth on oleic acid YNB Oleic Acid 0.0   0.0 0.2  
auxotrophy YNB Glucose 75mM Arginine 0.3   0.1 -0.1  
facs on lipid accumulation Sorted No BODIPY Gate 0.4   -0.1 0.1  
facs on lipid accumulation Sorted High BODIPY Gate 0.7   -0.3 -0.0  
auxotrophy YNB Glucose 0.2   -0.0 0.3  
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.0   -0.2 0.7  
growth on ypd YPD 0.1   0.1 0.8  
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