Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792797 to 794915 10012 mRNA_1645: 10013 - Hypothetical Protein, at 795092 to 795670 10013
Group Condition mRNA_1641 mRNA_1642 mRNA_1643 mRNA_1644 mRNA_1645
10009
10010
10011
10012
10013
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 -1.1 -0.3 -0.0  
growth on ypd YPD -0.3 -0.2 -0.4 -0.6  
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -1.3 0.4 0.1  
auxotrophy Dropout Complete -0.8 -0.0 0.4 -0.6  
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.2 -0.2 -0.3  
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 -0.3 -0.1 -0.0  
auxotrophy YNB Glucose 75mM Arginine -0.6 0.2 0.2 -0.6  
growth on oleic acid YNB Oleic Acid -0.3 -0.5 0.4 -0.2  
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.3 -0.1 -0.0  
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.9 0.7 0.1  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 0.1 0.1 -0.1  
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 1.1 -0.7 -0.2  
growth on oleic acid YNB Glucose -0.2 -0.2 0.2 -0.0  
auxotrophy YNB Glucose -0.1 -0.3 0.7 -0.4  
auxotrophy YNB Glucose 75mM Methionine -0.1 0.1 0.4 -0.5  
facs on lipid accumulation Sorted Low BODIPY Gate 0.0 0.2 -0.0 -0.1  
ypd buoyancy 40 hrs High Buoyancy 0.1 0.2 0.1 -0.3  
facs on lipid accumulation Sorted High BODIPY Gate 0.0 0.0 -0.1 0.3  
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.3 0.1 -0.0  
growth on ricinoleic acid YNB Glucose -0.2 -0.2 0.5 0.4  
facs on lipid accumulation Sorted No BODIPY Gate 0.3 0.3 -0.3 0.1  
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