Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792797 to 794915 10012
Group Condition mRNA_1640 mRNA_1641 mRNA_1642 mRNA_1643 mRNA_1644
10008
10009
10010
10011
10012
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.2 -0.7 -1.1 -0.3 -0.0
growth on ypd YPD 0.0 -0.3 -0.2 -0.4 -0.6
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.2 -1.3 0.4 0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.2 -0.2 -0.2 -0.3
auxotrophy Dropout Complete 0.0 -0.8 -0.0 0.4 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.2 -0.3 -0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.3 -0.6 -0.3 -0.1 -0.0
growth on oleic acid YNB Oleic Acid 0.2 -0.3 -0.5 0.4 -0.2
auxotrophy YNB Glucose 75mM Arginine 0.3 -0.6 0.2 0.2 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 -0.3 -0.9 0.7 0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 0.0 0.2 -0.0 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.3 0.0 0.0 -0.1 0.3
growth on oleic acid YNB Glucose 0.2 -0.2 -0.2 0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.4 0.3 0.3 -0.3 0.1
auxotrophy YNB Glucose 0.2 -0.1 -0.3 0.7 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.3 -0.5 1.1 -0.7 -0.2
auxotrophy YNB Glucose 75mM Methionine 0.2 -0.1 0.1 0.4 -0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.4 -0.4 0.1 0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy 0.1 0.1 0.2 0.1 -0.3
ypd buoyancy 40 hrs Median Buoyancy 0.0 0.1 0.3 0.1 -0.0
growth on ricinoleic acid YNB Glucose 0.2 -0.2 -0.2 0.5 0.4
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