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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057
10007
mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106
10008
mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144
10009
mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941
10010
mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624
10011
Group
Condition
mRNA_1639
mRNA_1640
mRNA_1641
mRNA_1642
mRNA_1643
10007
10008
10009
10010
10011
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
-0.7
-1.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-1.3
0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.2
-0.2
growth on ypd
YPD
0.0
-0.3
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.3
-0.6
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
-0.3
-0.9
0.7
auxotrophy
Dropout Complete
0.0
-0.8
-0.0
0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
0.0
0.0
-0.1
growth on oleic acid
YNB Oleic Acid
0.2
-0.3
-0.5
0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
0.3
0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.0
0.2
-0.0
growth on oleic acid
YNB Glucose
0.2
-0.2
-0.2
0.2
auxotrophy
YNB Glucose 75mM Arginine
0.3
-0.6
0.2
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.4
-0.4
0.1
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.3
-0.5
1.1
-0.7
growth on ricinoleic acid
YNB Glucose
0.2
-0.2
-0.2
0.5
auxotrophy
YNB Glucose
0.2
-0.1
-0.3
0.7
ypd buoyancy
40 hrs Median Buoyancy
0.0
0.1
0.3
0.1
auxotrophy
YNB Glucose 75mM Methionine
0.2
-0.1
0.1
0.4
ypd buoyancy
40 hrs High Buoyancy
0.1
0.1
0.2
0.1
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