Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057 10007 mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011
Group Condition mRNA_1639 mRNA_1640 mRNA_1641 mRNA_1642 mRNA_1643
10007
10008
10009
10010
10011
buoyancy on lipid accumulation 40 hrs Median Buoyancy   0.2 -0.7 -1.1 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid   -0.2 -0.2 -1.3 0.4
ypd buoyancy 40 hrs No Buoyancy Separation   -0.2 -0.2 -0.2 -0.2
growth on ypd YPD   0.0 -0.3 -0.2 -0.4
ypd buoyancy 40 hrs Low Buoyancy   -0.1 -0.2 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy   0.3 -0.6 -0.3 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid   0.1 -0.3 -0.9 0.7
auxotrophy Dropout Complete   0.0 -0.8 -0.0 0.4
facs on lipid accumulation Sorted High BODIPY Gate   -0.3 0.0 0.0 -0.1
growth on oleic acid YNB Oleic Acid   0.2 -0.3 -0.5 0.4
facs on lipid accumulation Sorted No BODIPY Gate   -0.4 0.3 0.3 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate   -0.2 0.0 0.2 -0.0
growth on oleic acid YNB Glucose   0.2 -0.2 -0.2 0.2
auxotrophy YNB Glucose 75mM Arginine   0.3 -0.6 0.2 0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation   0.4 -0.4 0.1 0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy   0.3 -0.5 1.1 -0.7
growth on ricinoleic acid YNB Glucose   0.2 -0.2 -0.2 0.5
auxotrophy YNB Glucose   0.2 -0.1 -0.3 0.7
ypd buoyancy 40 hrs Median Buoyancy   0.0 0.1 0.3 0.1
auxotrophy YNB Glucose 75mM Methionine   0.2 -0.1 0.1 0.4
ypd buoyancy 40 hrs High Buoyancy   0.1 0.1 0.2 0.1
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