Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574 10005 mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776391 to 779009 10006 mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057 10007 mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009
Group Condition mRNA_1637 mRNA_1638 mRNA_1639 mRNA_1640 mRNA_1641
10005
10006
10007
10008
10009
growth on ypd YPD -0.1 -0.3   0.0 -0.3
auxotrophy Dropout Complete 0.1 0.1   0.0 -0.8
growth on oleic acid YNB Oleic Acid -0.4 -0.1   0.2 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation 0.2 -0.2   -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.2 0.1   -0.3 0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.2   -0.4 0.3
auxotrophy YNB Glucose 75mM Arginine -0.3 0.3   0.3 -0.6
growth on oleic acid YNB Glucose -0.2 -0.1   0.2 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.2 0.2   0.2 -0.7
ypd buoyancy 40 hrs Low Buoyancy 0.1 0.2   -0.1 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid 0.1 0.3   -0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 0.3   -0.2 0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.1 0.0   0.3 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.4 -0.0   0.3 -0.6
auxotrophy YNB Glucose 75mM Methionine 0.0 0.1   0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.3 0.3   0.1 -0.3
auxotrophy YNB Glucose 0.2 0.2   0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.3 0.1   0.4 -0.4
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.2   0.0 0.1
ypd buoyancy 40 hrs High Buoyancy 0.2 0.1   0.1 0.1
growth on ricinoleic acid YNB Glucose 0.5 0.4   0.2 -0.2
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