Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004 mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574 10005 mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776391 to 779009 10006 mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057 10007 mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106 10008
Group Condition mRNA_1636 mRNA_1637 mRNA_1638 mRNA_1639 mRNA_1640
10004
10005
10006
10007
10008
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.1 -0.2   -0.4
growth on oleic acid YNB Oleic Acid -0.4 -0.4 -0.1   0.2
facs on lipid accumulation Sorted High BODIPY Gate 0.1 -0.2 0.1   -0.3
growth on ypd YPD 0.1 -0.1 -0.3   0.0
growth on oleic acid YNB Glucose -0.2 -0.2 -0.1   0.2
auxotrophy Dropout Complete -0.3 0.1 0.1   0.0
auxotrophy YNB Glucose 75mM Arginine -0.3 -0.3 0.3   0.3
facs on lipid accumulation Sorted Low BODIPY Gate 0.1 -0.2 0.3   -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 0.1 0.3   -0.2
auxotrophy YNB Glucose 75mM Methionine -0.2 0.0 0.1   0.2
ypd buoyancy 40 hrs No Buoyancy Separation 0.4 0.2 -0.2   -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 0.1 0.0   0.3
ypd buoyancy 40 hrs Low Buoyancy 0.1 0.1 0.2   -0.1
auxotrophy YNB Glucose -0.2 0.2 0.2   0.2
ypd buoyancy 40 hrs Median Buoyancy 0.0 0.1 0.2   0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 0.3 0.3   0.1
ypd buoyancy 40 hrs High Buoyancy 0.3 0.2 0.1   0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0 0.4 -0.0   0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1 0.2 0.2   0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1 0.3 0.1   0.4
growth on ricinoleic acid YNB Glucose -0.1 0.5 0.4   0.2
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