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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712
10004
mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574
10005
mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776391 to 779009
10006
mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057
10007
mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106
10008
Group
Condition
mRNA_1636
mRNA_1637
mRNA_1638
mRNA_1639
mRNA_1640
10004
10005
10006
10007
10008
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
-0.4
-0.1
0.2
facs on lipid accumulation
Sorted High BODIPY Gate
0.1
-0.2
0.1
-0.3
growth on ypd
YPD
0.1
-0.1
-0.3
0.0
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.1
0.2
auxotrophy
Dropout Complete
-0.3
0.1
0.1
0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
0.3
0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
-0.2
0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
0.1
0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
0.0
0.1
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
0.4
0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
0.1
0.0
0.3
ypd buoyancy
40 hrs Low Buoyancy
0.1
0.1
0.2
-0.1
auxotrophy
YNB Glucose
-0.2
0.2
0.2
0.2
ypd buoyancy
40 hrs Median Buoyancy
0.0
0.1
0.2
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
0.3
0.3
0.1
ypd buoyancy
40 hrs High Buoyancy
0.3
0.2
0.1
0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.4
-0.0
0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.2
0.2
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.3
0.1
0.4
growth on ricinoleic acid
YNB Glucose
-0.1
0.5
0.4
0.2
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