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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes "G-D-X-G" family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764315 to 766210
10002
mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767214 to 771755
10003
mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712
10004
mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574
10005
mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776391 to 779009
10006
Group
Condition
mRNA_1634
mRNA_1635
mRNA_1636
mRNA_1637
mRNA_1638
10002
10003
10004
10005
10006
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
-0.1
0.4
0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.4
-0.4
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.4
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
0.3
-1.3
0.1
-0.2
0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.5
-0.2
0.0
0.1
growth on ypd
YPD
-0.4
-0.0
0.1
-0.1
-0.3
auxotrophy
Dropout Complete
0.1
-0.7
-0.3
0.1
0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
-0.3
-0.3
0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.7
-0.1
0.3
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.7
-0.0
0.1
0.3
auxotrophy
YNB Glucose
0.1
-0.5
-0.2
0.2
0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.6
0.0
0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
0.5
-0.2
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
-0.0
-0.3
0.1
0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
0.0
0.1
0.1
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.2
-0.5
0.1
0.3
0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
0.1
0.3
0.2
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
-0.3
0.1
0.2
0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.2
0.0
0.1
0.2
growth on ricinoleic acid
YNB Glucose
0.1
-0.4
-0.1
0.5
0.4
facs on lipid accumulation
Sorted High BODIPY Gate
0.5
0.2
0.1
-0.2
0.1
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